Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

787684

078-R

Value Required

ORIGINATOR

Disease Body Location

Gynecologic

EOV

10033159 - Ovarian epithelial cancer

Value Required

Patient/Originator Specimen

Resection

Patient/Originating
Specimen

Passage of this Sample

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	70%	0%	30%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.21.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.21.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	APC	p.S21*	0.4733	131	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	APC	p.R1114*	0.3420	269	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	APC	p.R1450*	0.4407	177	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	ARID1B	p.G966S	0.5083	421	Missense_Mutation	Likely Oncogenic	Unknown	v4.6
	ARID4B	p.E868*	0.3636	231	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	ATM	p.M557Nfs*9	0.4211	209	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.6
	ATR	p.R1368*	0.4230	662	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	BRAF	p.K499N	0.3396	53	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v4.6
	BRCA2	p.E2121*	0.4731	93	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	CD58	p.E53*	0.3918	97	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	CHEK2	p.E321*	0.3873	173	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	CHEK2	p.Y297*	0.3200	50	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	CHEK2	p.E70*	0.3497	163	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	CTCF	p.E133*	0.4096	249	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	DTX1	p.R397*	0.4258	209	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	EED	p.R441*	0.3475	118	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	EZH2	p.R207Q	0.4019	423	Missense_Mutation	Inconclusive	Inconclusive	v4.6
	FAT1	p.X3881_splice	0.4236	288	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v4.6
	FAT1	p.R2556*	0.3618	152	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	FGFR2	p.R203H	0.3929	140	Missense_Mutation	Likely Neutral	Likely Neutral	v4.6
	FH	p.E404*	0.4394	132	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	FUBP1	p.R344*	0.4051	237	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	INHA	p.E77*	0.4375	208	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	KMT2D	p.R3982*	0.4916	179	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	MAP3K1	p.E1441*	0.3467	75	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	MITF	p.E327*	0.3636	110	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	MSH2	p.E278*	0.4845	97	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	NCOR1	p.E1346*	0.4242	356	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	NF1	p.E163*	0.2500	36	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	NF1	p.R440*	0.3704	243	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	NOTCH1	p.V1671I	0.4512	82	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v4.6
	PBRM1	p.R1160*	0.4386	114	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	PBRM1	p.R710*	0.4330	224	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	PIK3R1	p.R162*	0.3213	361	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	PIK3R1	p.R348*	0.4101	356	Nonsense_Mutation	Oncogenic	Loss-of-function	v4.6
	PMS2	p.R563*	0.4241	316	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	POLE	p.P286R	0.4196	143	Missense_Mutation	Likely Oncogenic	Loss-of-function	v4.6
	PTEN	p.E7*	0.4796	98	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	PTEN	p.R173C	0.2917	48	Missense_Mutation	Likely Oncogenic	Loss-of-function	v4.6
	PTPRD	p.S431L	0.3830	188	Missense_Mutation	Likely Oncogenic	Unknown	v4.6
	PTPRT	p.R936*	0.4671	167	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	PTPRT	p.E166*	0.3704	54	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	RAD51B	p.E198*	0.2143	42	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	RASA1	p.E722*	0.4134	179	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	RASA1	p.R1010*	0.3563	261	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	RB1	p.E137*	0.7347	49	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	RB1	p.S648*	0.3531	286	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	SESN3	p.S308*	0.3724	145	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	SH2D1A	p.E119*	0.4054	37	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	SHQ1	p.E109*	0.4865	37	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	SPOP	p.R240*	0.4398	166	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	TBX3	p.X289_splice	0.3452	281	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v4.6
	TP53BP1	p.E288*	0.3974	307	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	TSC1	p.E485*	0.3846	39	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	XPO1	p.R749Q	0.3401	297	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v4.6
	XPO1	p.E571K	0.4683	126	Missense_Mutation	Oncogenic	Gain-of-function	v4.6
	ZFHX3	p.E2975*	0.4364	236	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	ZFHX3	p.R2668*	0.5144	383	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	ARHGAP35	p.E371*	0.8271	376	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	DOT1L	p.A1003T	0.4611	527	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v4.6
	RAD17	p.R301*	0.3953	43	Nonsense_Mutation	Likely Oncogenic	Loss-of-function	v4.6
	LRP1B	p.E2849*	0.3538	359	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	LRP1B	p.X115_splice	0.4754	61	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v4.6

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