Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

147771

066-R1

Value Required

NNAV81

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	80%	%	20%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.21.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.21.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ARID1A	p.Q2210*	0.5189	264	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	ASXL1	p.G645Vfs*58	1.0000	141	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	ATR	p.I774Nfs*3	0.3390	59	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.6
	ATRX	p.T1582Qfs*24	1.0000	105	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	ATXN2	p.Q183Hfs*23	0.5573	192	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	ATXN2	p.Q175Afs*66	0.5000	190	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	BAP1	p.E198Rfs*33	0.5323	201	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	BARD1	p.K209Efs*5	0.4000	100	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.6
	BCL10	p.S167Lfs*6	0.4521	73	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	BLM	p.N515Mfs*16	0.5030	167	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	BRCA2	p.T3033Lfs*29	0.4022	92	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	CASP8	p.G293Dfs*4	0.5190	158	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	CASP8	p.K532Nfs*73	0.5158	221	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	CTNNB1	p.S45P	1.0000	118	Missense_Mutation	Likely Oncogenic	Gain-of-function	v4.6
	CUX1	p.I1092Sfs*39	0.5425	247	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	DNMT3A	p.G413Afs*238	0.4489	274	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	DNMT3A	p.R181H	0.5369	149	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	ECT2L	p.G388Vfs*25	0.4588	85	Frame_Shift_Del	Inconclusive	Inconclusive	v4.6
	EGR1	p.H334Tfs*198	0.4418	661	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	FANCD2	p.D466*	0.2782	133	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.6
	FLCN	p.H429Pfs*27	0.5055	91	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.6
	FOXO1	p.G577Afs*5	0.3226	186	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	HNF1A	p.P291Qfs*51	0.3422	488	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	KMT2A	p.P2609Tfs*8	0.5597	159	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.6
	KMT2B	p.G1879Vfs*16	0.5202	173	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	KMT2C	p.K2797Rfs*26	0.9648	142	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	KMT2C	p.P1948Lfs*26	0.4648	213	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	KMT2D	p.S102Afs*28	0.3312	471	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	KMT2D	p.H77Qfs*53	0.3295	440	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	MGA	p.R866*	0.5366	328	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	MLH1	p.E668Kfs*115	1.0000	132	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	MSH3	p.K383Rfs*32	0.4730	74	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	NRAS	p.G12C	0.4189	148	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v4.6
	PTCH1	p.S1203Afs*52	0.4741	135	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	RAD50	p.K722Gfs*5	0.4268	157	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	RNF43	p.G659Vfs*41	0.5269	93	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	SETD2	p.R1407Gfs*5	0.5036	139	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	SMARCA4	p.X813_splice	0.5970	335	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v4.6
	SOX17	p.P328Rfs*59	0.4777	672	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	SOX9	p.V306Cfs*77	0.4393	280	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	TCF7L2	p.K468Sfs*23	0.4970	167	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	TP53	p.Q167*	0.4884	172	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v4.6
	TP53BP1	p.E716Rfs*9	0.4941	427	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.6
	AJUBA	p.R121Afs*121	0.4412	68	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	ALDH2	p.K289Efs*45	0.2500	120	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v4.6
	RNASEH2B	p.K170Rfs*9	0.4091	44	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	ZFP36L2	p.P271Rfs*190	0.5652	92	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	ZFP36L2	p.G144Afs*43	0.4295	149	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6
	CPN1	p.E314Kfs*4	0.5060	166	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v4.6

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