Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

116655

072-R

Value Required

AK7

Disease Body Location

Digestive/Gastrointestinal

MACR

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

0

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	60%	20%	20%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.14.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.14.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ANKRD11	p.A2265Rfs*8	0.3556	45	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.V452Sfs*7	0.5000	60	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.T1556Nfs*3	0.5214	140	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600E	0.4898	49	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	BRIP1	p.R173C	0.5977	87	Missense_Mutation	Inconclusive	Inconclusive	v3.14
	FANCA	p.X1172_splice	0.1818	165	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FBXW7	p.R465C	0.3916	143	Missense_Mutation	Oncogenic	Loss-of-function	v3.14
	HIST1H1D	p.A186Lfs*?	0.5133	113	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	INHA	p.L189Cfs*2	0.4225	329	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KEAP1	p.F478Lfs*2	0.4946	186	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.K2797Rfs*26	0.4671	167	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	NOTCH3	p.K2069Rfs*16	0.4792	48	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAD50	p.K722Rfs*14	0.5939	197	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.G659Vfs*41	0.4710	138	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.P192Rfs*11	0.0000	402	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TSC2	p.T1247Sfs*74	0.4091	88	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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