Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

116655

072-R

Value Required

ORIGINATOR

Disease Body Location

Digestive/Gastrointestinal

MACR

10009951 - Adenocarcinoma - colon

Value Required

Patient/Originator Specimen

Resection

Patient/Originating
Specimen

Passage of this Sample

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	10%	0%	90%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.4.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	APC	p.V452Sfs*7	0.4159	113	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ATR	p.I774Yfs*5	0.4918	122	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600E	0.5211	71	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	BRCA2	p.I605Yfs*9	0.3937	127	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRIP1	p.R173C	0.4474	114	Missense_Mutation	Inconclusive	Inconclusive	v3.14
	HIST1H1D	p.A186Lfs*?	0.4545	341	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KEAP1	p.F478Lfs*2	0.4531	309	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	NOTCH3	p.K2069Rfs*16	0.3860	171	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	NOTCH3	p.A1802Gfs*8	0.4848	297	Frame_Shift_Ins	Likely Oncogenic	Likely Gain-of-function	v3.14
	PIK3R1	p.X433_splice	0.5000	48	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.G659Vfs*41	0.5041	363	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.P192Rfs*11	0.0000	510	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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