Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

116655

072-R

Value Required

AK7A18

Disease Body Location

Digestive/Gastrointestinal

MACR

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	80%	10%	10%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.14.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.14.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ANKRD11	p.A2265Rfs*8	0.7206	68	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.V452Sfs*7	0.5423	142	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.T1556Nfs*3	0.5036	280	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600E	0.4105	95	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	BRIP1	p.R173C	0.5470	117	Missense_Mutation	Inconclusive	Inconclusive	v3.14
	FBXW7	p.R465C	0.4507	335	Missense_Mutation	Oncogenic	Loss-of-function	v3.14
	HIST1H1D	p.A186Lfs*?	0.4453	256	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	INHA	p.L189Cfs*2	0.4696	658	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KEAP1	p.F478Lfs*2	0.4755	347	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.K2797Rfs*26	0.5341	279	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	NOTCH3	p.K2069Rfs*16	0.5615	130	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAD50	p.K722Rfs*14	0.4795	390	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.G659Vfs*41	0.4470	264	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.P192Rfs*11	0.0000	695	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TSC2	p.T1247Sfs*74	0.4556	180	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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