Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

116655

072-R

Value Required

AK7A20

Disease Body Location

Digestive/Gastrointestinal

MACR

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	80%	10%	10%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.14.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.14.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ANKRD11	p.A2265Rfs*8	0.6667	27	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.V452Sfs*7	0.4545	55	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.T1556Nfs*3	0.5833	120	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600E	0.6825	63	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	BRIP1	p.R173C	0.4561	57	Missense_Mutation	Inconclusive	Inconclusive	v3.14
	FBXW7	p.R465C	0.5847	118	Missense_Mutation	Oncogenic	Loss-of-function	v3.14
	HIST1H1D	p.A186Lfs*?	0.3942	104	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	INHA	p.L189Cfs*2	0.5182	274	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KEAP1	p.F478Lfs*2	0.5680	169	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.K2797Rfs*26	0.6875	160	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	NOTCH3	p.K2069Rfs*16	0.6667	45	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	NOTCH3	p.X715_splice	0.3600	50	Splice_Site	Likely Oncogenic	Likely Gain-of-function	v3.14
	RAD50	p.K722Rfs*14	0.5189	185	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.G659Vfs*41	0.4599	137	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.P192Rfs*11	0.0000	391	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TGFBR2	p.K153Afs*3	0.0000	233	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TNFAIP3	p.E366Gfs*22	0.2105	152	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TSC2	p.T1247Sfs*74	0.5161	62	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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