Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

116655

072-R

Value Required

AK7A17CJ5

Disease Body Location

Digestive/Gastrointestinal

MACR

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	80%	10%	10%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.14.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.14.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ANKRD11	p.A2265Rfs*8	0.4603	63	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.V452Sfs*7	0.5109	92	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	APC	p.T1556Nfs*3	0.4920	250	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600E	0.3014	73	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	BRIP1	p.R173C	0.4220	109	Missense_Mutation	Inconclusive	Inconclusive	v3.14
	FBXW7	p.R465C	0.4550	211	Missense_Mutation	Oncogenic	Loss-of-function	v3.14
	HIST1H1D	p.A186Lfs*?	0.5222	203	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	INHA	p.L189Cfs*2	0.4795	511	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KEAP1	p.F478Lfs*2	0.5046	327	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2C	p.K2797Rfs*26	0.5169	236	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2D	p.T4772Nfs*9	0.5031	163	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	NOTCH3	p.K2069Rfs*16	0.4598	87	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RAD50	p.K722Rfs*14	0.4383	324	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.G659Vfs*41	0.5282	195	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	RNF43	p.P192Rfs*11	0.0000	644	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TGFBR2	p.K153Afs*3	0.5034	439	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TSC2	p.T1247Sfs*74	0.5815	184	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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