Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

397859

316-R

Value Required

P0POOL_OT-Q23N59

Disease Body Location

Breast

IDC

10006190 - Invasive breast carcinoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	35%	60%	5%	<Unknown>

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.16.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.16.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ARID4A	p.X1071_splice	1.0000	130	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	EP400	p.Q2738_Q2739ins*	0.5271	129	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	PIK3CA	p.Q546K	0.5333	195	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	RB1	p.F839Sfs*10	1.0000	37	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TP53	p.I195N	0.9921	504	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14

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