Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

114551

080-T

Value Required

M667M228C43

Disease Body Location

Head and Neck

ACCC

10039397 - Salivary gland cancer

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	85%	10%	5%	<Unknown>

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.13.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	BCOR	p.R1231Gfs*7	0.3231	458	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	EP300	p.D1399N	0.4231	26	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	ERRFI1	-	0.6364	11	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v3.14
	FBXW7	p.R479Q	0.5446	202	Missense_Mutation	Oncogenic	Loss-of-function	v3.14
	FBXW7	p.R222*	0.4958	119	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	NOTCH1	p.V1671I	0.3846	39	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v3.14
	TP53	p.R175H	0.5000	172	Missense_Mutation	Oncogenic	Loss-of-function	v3.14

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