Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

625472

104-R

Value Required

H68

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

0

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	85%	%	15%	<Unknown>

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ASXL1	p.G645Wfs*12	0.0000	201	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ATRX	p.N633Tfs*16	0.4455	321	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCOR	p.R1514*	0.4590	61	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCORL1	p.M644Hfs*21	0.5691	673	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCORL1	p.Q798*	0.5382	563	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600E	1.0000	68	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	BRCA2	p.Y1220Ifs*8	0.6881	327	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	CASP8	p.R292W	0.4184	239	Missense_Mutation	Likely Oncogenic	Unknown	v3.14
	CCND3	p.P284L	1.0000	107	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v3.14
	CCND3	p.P284L	0.0000	109	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v3.14
	CDKN1A	p.R83Gfs*65	0.4690	258	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	CDKN2A	p.D84N	0.5743	101	Missense_Mutation	Likely Oncogenic	Loss-of-function	v3.14
	DIS3	p.I678Ffs*59	0.4038	208	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	EPHA3	p.E647Rfs*9	0.4439	187	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ESCO2	p.T254Nfs*27	0.4590	183	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	FOXL2	p.K193Sfs*78	0.4639	194	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	INPPL1	p.R1156Gfs*46	0.4674	92	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	JARID2	p.A396Rfs*18	0.5311	273	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2A	p.K3828Rfs*31	0.5254	236	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2D	p.R5340*	0.5045	111	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	MGA	p.D2578Tfs*10	0.5340	324	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	MSH2	p.A230Lfs*16	0.4552	279	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	MSH3	p.K383Rfs*32	0.5600	75	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	PIK3CA	p.C420R	0.4701	234	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	RB1	p.R320*	0.6442	104	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	RB1	p.R418Kfs*10	0.2910	134	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	RIT1	p.A57D	0.2293	737	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v3.14
	RNF43	p.P660Vfs*41	0.9948	194	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	SUZ12	p.R196Efs*4	0.4286	84	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	TET1	p.N486Ifs*6	0.5404	235	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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