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Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
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Sample
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Patient ID
971451
Open Patient
Specimen ID
060-R
Open Specimen
Sample ID
ORIGINATOR
Disease Body Location
Musculoskeletal
OncoTree Code
DDLS
CTEP SDC Code
10024631 - Liposarcoma
PDM Type
Patient/Originator Specimen
Tissue Type
Resection
Patient/Originating
Specimen
Yes
No
Passage of this Sample
Sample
Notes
Pathology Data (if available)
Pathology Data
View
Tumor
Grade
Tumor
Content
Necrosis
Stromal
Inflammatory
Cells
Low Magnification Image
High Magnification Image
High grade or poorly differentiated
70%
0%
30%
Absent/No Inflammation
Export
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.2.51.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.51.0
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.21.0
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.2.21.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
ATM
p.F858L
0.5593
236
Missense_Mutation
Likely Neutral
Likely Neutral
v4.8
MUTYH
p.G382D
0.4719
392
Missense_Mutation
Likely Oncogenic
Likely Loss-of-function
v4.8
TGFBR1
p.R11Gfs*39
0.3200
25
Frame_Shift_Del
Likely Oncogenic
Likely Loss-of-function
v4.8
Export
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