Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

625472

104-R

Value Required

H69

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

0

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	65%	15%	20%	<Unknown>

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ASXL1	p.G645Wfs*12	0.0000	163	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCOR	p.R1514*	1.0000	40	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCORL1	p.M644Hfs*21	1.0000	270	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	BCORL1	p.Q798*	0.9925	266	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	BRAF	p.V600E	1.0000	54	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	BRCA2	p.Y1220Ifs*8	0.6917	266	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	CASP8	p.R292W	0.5432	162	Missense_Mutation	Likely Oncogenic	Unknown	v3.14
	CCND3	p.P284L	1.0000	119	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v3.14
	CDKN1A	p.R83Gfs*65	0.3447	206	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	CDKN2A	p.D84N	0.4333	60	Missense_Mutation	Likely Oncogenic	Loss-of-function	v3.14
	DIS3	p.I678Ffs*59	0.3714	175	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	EPHA3	p.E647Rfs*9	0.5778	135	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	ESCO2	p.T254Nfs*27	0.4254	134	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	FOXL2	p.K193Sfs*78	0.4662	148	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	INPPL1	p.R1156Gfs*46	0.5333	90	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	JARID2	p.A396Rfs*18	0.4834	211	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2A	p.K3828Rfs*31	0.5140	179	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	KMT2D	p.R5340*	0.4658	73	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	MGA	p.D2578Tfs*10	0.5421	273	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	MSH2	p.A230Lfs*16	0.5286	227	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	MSH3	p.K383Rfs*32	0.5412	85	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14
	PIK3CA	p.C420R	0.5566	106	Missense_Mutation	Oncogenic	Gain-of-function	v3.14
	RB1	p.R320*	0.6234	77	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v3.14
	RB1	p.R418Kfs*10	0.2462	130	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	RIT1	p.A57D	0.2373	552	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	v3.14
	RNF43	p.P660Vfs*41	1.0000	128	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v3.14
	TET1	p.N486Ifs*6	0.3575	193	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v3.14

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