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Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
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Sample
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Patient ID
765638
Open Patient
Specimen ID
272-R
Open Specimen
Sample ID
AG2I09
Disease Body Location
Respiratory/Thoracic
OncoTree Code
LUSC
CTEP SDC Code
10025126 - Squamous cell lung carcinoma
PDM Type
PDX
Tissue Type
Resection
Patient/Originating
Specimen
Yes
No
Passage of this Sample
1
Sample
Notes
Pathology Data (if available)
Pathology Data
View
Tumor
Grade
Tumor
Content
Necrosis
Stromal
Inflammatory
Cells
Low Magnification Image
High Magnification Image
High grade or poorly differentiated
55%
30%
15%
<Unknown>
Export
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.1.50.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
1.2
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
1.2
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.1.13.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
APC
p.Q1303*
0.9959
245
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
v3.14
BLM
p.T57Hfs*4
0.3774
106
Frame_Shift_Del
Likely Oncogenic
Likely Loss-of-function
v3.14
BRCA2
p.G602R
0.4534
247
Missense_Mutation
Inconclusive
Inconclusive
v3.14
NFE2L2
p.G31V
0.6438
146
Missense_Mutation
Oncogenic
Gain-of-function
v3.14
SESN1
p.V263Ffs*63
0.5888
428
Frame_Shift_Del
Likely Oncogenic
Likely Loss-of-function
v3.14
TP53
p.X33_splice
0.9926
136
Splice_Site
Likely Oncogenic
Likely Loss-of-function
v3.14
Export
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