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PDMR Database User Guide
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Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
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Sample
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Patient ID
145666
Open Patient
Specimen ID
245-R
Open Specimen
Sample ID
ORIGINATOR
Disease Body Location
Respiratory/Thoracic
OncoTree Code
LUAD
CTEP SDC Code
10025032 - Lung adenocarcinoma
PDM Type
Patient/Originator Specimen
Tissue Type
Resection
Patient/Originating
Specimen
Yes
No
Passage of this Sample
Sample
Notes
Pathology Data (if available)
Pathology Data
no data found
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.2.51.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.51.0
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.21.0
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.2.21.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
AR
p.L57_Q60del
0.3939
66
In_Frame_Del
Likely Neutral
Likely Neutral
v4.5
CD58
p.L11Wfs*31
0.4312
109
Frame_Shift_Del
Likely Oncogenic
Likely Loss-of-function
v4.5
CIITA
p.X120_splice
0.5620
137
Splice_Site
Likely Oncogenic
Likely Loss-of-function
v4.5
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