Skip to Content
Contact PDMR
|
PDMR Database User Guide
Home
Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
Reports
Search
Specimen
Cancel
Patient ID
K03247
Open Patient
Specimen ID
164-R
Disease Body Location
Breast
OncoTree Code
IDC
CTEP SDC Code
10006190 - Invasive breast carcinoma
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Breast
Provided Tissue Origin
Primary
Collection Date
06/2017
Age at Sampling
59
General Model Information
Model Notes
PDX IHC/Path: TNBC IHC: ER-, PR-, Her2-, AR-
Derived in SCID-beige hosts
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
No
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Mammary Fat Pad
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*11:01
A*26:01
B*35:01
B*38:01
C*04:01
C*12:03
6/6
PAM50 Classifier
Not Determined
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
8
Received P7 material from Contributor
9
10
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
PDX
K03247-164-R
10
Available
Not Applicable
Available Upon Request
Available Upon Request
Available
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
PDX
AL-K4P
No
8
Yes
Yes
Yes
Yes
PDX
AL-K4Q
No
8
Yes
No
No
No
PDX
AL-K4T
No
8
Yes
Yes
Yes
Yes
PDX
AL-K4P_AL-M832
No
9
Yes
Yes
Yes
Yes
PDX
AL-K4Q_AL-M836
No
9
Yes
Yes
Yes
Yes
PDX
AL-K4T_AL-M837
No
9
Yes
Yes
Yes
Yes
PDX
AL-K4Q_AL-M836_AL-Q42
No
10
Yes
No
No
No
Export
1 - 7