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Patient Specimen
Sample (PDX or In Vitro Culture)
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Patient ID
CN0330
Open Patient
Specimen ID
F216
Disease Body Location
Digestive/Gastrointestinal
OncoTree Code
COAD
CTEP SDC Code
10009951 - Adenocarcinoma - colon
Human Pathogen
Testing Summary
Negative
Tissue Type
Resection
Tissue Collected
Colon
Provided Tissue Origin
Primary
Collection Date
01/2010
Age at Sampling
62
General Model Information
Model Notes
NGS Characterization
Able to Viably Passage
into Athymic Nude Mice?
Unknown
Mouse Strain Used
for Engraftment
NSG (NOD.Cg-Prkdc[scid]Il2rg[tm1Wjl]/SzJ)
Viable Passage
Implantation Site
Subcutaneous (flank)
MSI Status
MSI-Stable
HLA Profile(s)
A1
A2
B1
B2
C1
C2
PDX Concordance / PDM Type
A*24:02
A*32:01
B*14:02
B*15:01
C*07:02
C*08:02
5/5
CMS Category
CMS2
PDX Metastatic in NSG?
Not Observed
PDX Growth Curve Data (if available)
Growth Curve Analysis
View
Passage
Growth Curve
Growth Curve Notes
0
1
2
Export
Consensus Genomic Variants from WES Files
External Consensus Genomic Variants Data
A data file is available if a Download link is displayed:
Consensus Whole Exome Sequence (*.vcf)
Download
Ver:
2.0
Consensus Whole Exome Sequence, annotated (*.maf)
Download
Ver:
2.0
Distribution Lots
View
PDM Type
Name
Max. Passage
Cryovial for
PDX Generation
In Vitro
Culture Material
PDX
DNA Vials
PDX
RNA Vials
PDX Flash-
Frozen Vials
PDX
CN0330-F216
6
Available
Not Applicable
Currently Unavailable
Currently Unavailable
Currently Unavailable
Export
Sample (PDX)
View
PDM Type
Sample ID
Patient/Originating
Specimen
PDX Passage
Sample Images
Avail
OncoKB Gene
Panel Data
Whole Exome
Sequence Avail
RNASeq
Avail
PDX
M518
No
4
Yes
Yes
Yes
Yes
PDX
M519
No
4
Yes
No
No
Yes
PDX
M519M101
No
5
Yes
No
No
No
PDX
M518M203
No
5
Yes
Yes
Yes
Yes
PDX
M518M201
No
5
Yes
Yes
Yes
Yes
PDX
M517
No
4
Yes
No
No
No
PDX
P3_002
No
3
Yes
No
No
No
PDX
M551
No
4
Yes
No
No
No
PDX
M551M121M1410
No
6
Yes
Yes
Yes
Yes
PDX
M519M2M218
No
6
Yes
Yes
Yes
Yes
Patient/Originator Specimen
ORIGINATOR
Yes
Yes
No
No
No
Export
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