Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

172845

142-T

Value Required

M80J09J83

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	35%	55%	10%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.13.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	AMER1	p.R497*	0.8138	145	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	-
	APC	p.N1535Mfs*30	0.9967	304	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	KRAS	p.G12D	0.6216	222	Missense_Mutation	Oncogenic	Gain-of-function	-
	MST1	p.X417_splice	0.0960	125	Splice_Site	Likely Oncogenic	Likely Loss-of-function	-
	PIK3CA	p.E545K	0.6364	121	Missense_Mutation	Oncogenic	Gain-of-function	-
	MBD4	p.E522*	0.2907	172	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	-

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