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Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
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Sample
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Patient ID
111316
Open Patient
Specimen ID
319-R
Open Specimen
Sample ID
AH5Q86T81
Disease Body Location
Digestive/Gastrointestinal
OncoTree Code
GIST
CTEP SDC Code
10051066 - Gastrointestinal stromal tumor
PDM Type
PDX
Tissue Type
Resection
Patient/Originating
Specimen
Yes
No
Passage of this Sample
2
Sample
Notes
Pathology Data (if available)
Pathology Data
View
Tumor
Grade
Tumor
Content
Necrosis
Stromal
Inflammatory
Cells
Low Magnification Image
High Magnification Image
<Unknown>
85%
10%
5%
Absent/No Inflammation
Export
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.2.51.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.51.0
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.21.0
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.2.21.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
KIT
p.Q556_T574delinsP
0.2813
487
In_Frame_Del
Likely Oncogenic
Gain-of-function
-
KIT
p.D820Y
0.5210
501
Missense_Mutation
Resistance
Inconclusive
-
CHD4
p.E139del
0.0716
349
In_Frame_Del
Inconclusive
Inconclusive
-
Export
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