Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

253963

270-R

Value Required

HP2FT5C28

Disease Body Location

Breast

BRCNOS

10006190 - Invasive breast carcinoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	95%	0%	5%	Absent/No Inflammation

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.4.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.4.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.4.21.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.4.21.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	BRCA2	p.S2835P	1.0000	65	Missense_Mutation	Inconclusive	Inconclusive	-
	DICER1	p.N998Ifs*3	0.3262	282	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	ERRFI1	-	0.4048	42	Splice_Site	Likely Oncogenic	Likely Loss-of-function	-
	KDM5C	p.V1075Rfs*69	0.5375	333	Frame_Shift_Del	Likely Oncogenic	Loss-of-function	-
	TP53	p.F109Wfs*41	1.0000	49	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-

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