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Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
Reports
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Sample
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Patient ID
121662
Open Patient
Specimen ID
129-R
Open Specimen
Sample ID
K6JEQ5
Disease Body Location
Respiratory/Thoracic
OncoTree Code
LUAD
CTEP SDC Code
10025032 - Lung adenocarcinoma
PDM Type
PDX
Tissue Type
Resection
Patient/Originating
Specimen
Yes
No
Passage of this Sample
1
Sample
Notes
Pathology Data (if available)
Pathology Data
View
Tumor
Grade
Tumor
Content
Necrosis
Stromal
Inflammatory
Cells
Low Magnification Image
High Magnification Image
High grade or poorly differentiated
80%
0%
20%
2+ (Moderate)
Export
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.2.51.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.51.0
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.21.0
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.2.21.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
None Found
p.R463*
0.3262
141
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
-
KRAS
p.G12C
0.4806
310
Missense_Mutation
Oncogenic
Gain-of-function
-
TP53
p.E298*
0.4205
264
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
-
TP53
p.P152Rfs*18
0.5532
141
Frame_Shift_Del
Likely Oncogenic
Likely Loss-of-function
-
Export
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