Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

695669

166-R

Value Required

WR7

Disease Body Location

Skin

MEL

10053571 - Melanoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

0

Sample
Notes

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Pathology Data (if available)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ARID1B	p.E2188*	0.5481	270	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	ARID2	p.R274*	1.0000	52	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	BRAF	p.V600K	0.6842	76	Missense_Mutation	Oncogenic	Gain-of-function	v7.1
	BRCA2	p.P3280H	0.4645	310	Missense_Mutation	Likely Neutral	Likely Neutral	v7.1
	EGFR	p.S306L	0.5231	216	Missense_Mutation	Likely Neutral	Likely Neutral	v7.1
	KMT2B	p.W1786*	0.4258	155	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	NF1	p.R1241*	0.4303	165	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	NF1	p.R2450*	0.4146	82	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	PTPRD	p.R1088C	0.4703	185	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	RAC1	p.P29S	0.5397	63	Missense_Mutation	Oncogenic	Gain-of-function	v7.1
	SMARCA4	p.R1135Q	0.4046	131	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	TP53BP1	p.R639*	0.4659	249	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	FHIT	-	0.4752	202	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v7.1

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