Skip to Content
Contact PDMR
|
PDMR Database User Guide
Home
Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
Reports
Search
Sample
Cancel
Patient ID
121662
Open Patient
Specimen ID
129-R
Open Specimen
Sample ID
ORIGINATOR
Disease Body Location
Respiratory/Thoracic
OncoTree Code
LUAD
CTEP SDC Code
10025032 - Lung adenocarcinoma
PDM Type
Patient/Originator Specimen
Tissue Type
Resection
Patient/Originating
Specimen
Yes
No
Passage of this Sample
Sample
Notes
Pathology Data (if available)
Pathology Data
no data found
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.2.51.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.51.0
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
2.0.2.21.0
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.2.21.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
None Found
p.R463*
0.4103
156
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
-
KRAS
p.G12C
0.1658
193
Missense_Mutation
Oncogenic
Gain-of-function
-
TP53
p.E298*
0.1462
342
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
-
Export
1 - 3