Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

114551

080-T

Value Required

M676

Disease Body Location

Head and Neck

ACCC

10039397 - Salivary gland cancer

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

0

Sample
Notes

Hide or show region

Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Low grade or well differentiated	75%	15%	5%	<Unknown>

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.13.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	BCOR	p.R1231Gfs*7	0.3358	411	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	ERRFI1	-	0.5250	40	Splice_Site	Likely Oncogenic	Likely Loss-of-function	-
	FBXW7	p.R479Q	0.3994	323	Missense_Mutation	Oncogenic	Loss-of-function	-
	FBXW7	p.R222*	0.4895	190	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	-
	ROBO1	p.R922H	0.5714	224	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	-
	TP53	p.R175H	0.5877	114	Missense_Mutation	Oncogenic	Loss-of-function	-
	ZMYM3	p.L85Afs*4	0.4107	168	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-

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