Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

997537

175-T

Value Required

HN1

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

0

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	70%	20%	10%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ATM	p.K2811Sfs*46	0.5093	108	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	ATR	p.I774Yfs*5	0.5619	105	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	BRAF	p.V600E	0.4058	69	Missense_Mutation	Oncogenic	Gain-of-function	v7.1
	BRCA2	p.T3085Qfs*19	0.4637	179	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	CDKN1B	p.D63Rfs*62	0.7119	479	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v7.1
	CREBBP	p.K1565Rfs*70	0.5470	234	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	EPHA7	p.X33_splice	0.3761	117	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v7.1
	FAT1	p.X3402_splice	0.5083	120	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v7.1
	FAT1	p.N126Kfs*3	0.4932	440	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v7.1
	HNF1A	p.P291Qfs*51	0.6312	404	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	JAK1	p.P861Tfs*4	0.5259	270	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v7.1
	KMT2D	p.Q2109Afs*46	0.2678	295	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v7.1
	MSH3	p.K383Rfs*32	0.9908	109	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	MSH6	p.K247Nfs*32	0.1589	107	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	PHOX2B	p.G268Afs*41	0.5054	184	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	PIK3R1	p.R461*	0.5732	82	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	PTEN	p.L57Wfs*42	0.5306	49	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	PTEN	p.K267Rfs*9	0.4414	111	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	RAD50	p.K722Rfs*14	0.5676	296	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	RECQL	p.V41Sfs*2	0.3831	295	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	RNF43	p.G659Vfs*41	0.4751	221	Frame_Shift_Del	Inconclusive	Inconclusive	v7.1
	RNF43	p.R117Pfs*8	1.0000	136	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v7.1
	SESN2	p.Q229Rfs*18	0.4842	221	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	SPEN	p.A2105Lfs*33	0.4519	208	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	SPEN	p.P2461Hfs*15	0.5143	455	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	SPRTN	p.G222Afs*7	0.5415	205	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	TP53	p.R273C	0.5000	88	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	ZNRF3	p.G612Afs*54	0.4769	432	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	FANCL	p.Q99Rfs*17	0.4576	236	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	ZFP36L1	p.D133Tfs*15	0.1772	536	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	LRP1B	p.H4368Tfs*4	0.4323	155	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	CHD4	p.K119del	0.3681	163	In_Frame_Del	Inconclusive	Inconclusive	v7.1
	CHD2	p.K1245Nfs*4	0.5745	94	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	COL2A1	p.Q36*	0.2619	42	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	PTPN13	p.K285Nfs*45	0.5030	328	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	XRCC1	p.A189Lfs*44	0.4464	168	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	FANCE	p.P310Qfs*54	0.4612	219	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	HOXA11	p.I299Lfs*30	0.4723	235	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1

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