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Patient
Patient Specimen
Sample (PDX or In Vitro Culture)
Distribution Lots
Genomic Analysis
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Sample
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Patient ID
425362
Open Patient
Specimen ID
245-T
Open Specimen
Sample ID
AY7U79
Disease Body Location
Skin
OncoTree Code
MEL
CTEP SDC Code
10053571 - Melanoma
PDM Type
PDX
Tissue Type
Tumor Biopsy
Patient/Originating
Specimen
Yes
No
Passage of this Sample
1
Sample
Notes
Pathology Data (if available)
Pathology Data
View
Tumor
Grade
Tumor
Content
Necrosis
Stromal
Inflammatory
Cells
Low Magnification Image
High Magnification Image
<Unknown>
90%
%
%
<Unknown>
Export
Genomic Analysis
External Genetic Analysis Data
A data file is available if a Download link is displayed:
Somatic Mutations Associated with Cancer (*.vcf and *.maf)
Whole Exome Sequencing (*.vcf)
Download
Ver:
2.0.1.50.0
Whole Exome FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
1.2
RNASeq FASTQ (*.FASTQ.gz; for paired-end sequence, download both files)
Download Read1 FASTQ
Download Read2 FASTQ
Ver:
1.2
RNASeq Transcripts per Million (TPM; *.RSEM.genes.results and *.RSEM.isoforms.results tab-delimited text file)
Download RSEM (genes)
Download RSEM (isoforms)
Ver:
2.0.1.4.0
OncoKB Gene Panel
View
Hugo
Symbol
HGVS Protein
Change
Variant Allele
Frequency
Total
Reads
Variant
Class
Oncogenicity
Predicted
Functional Effect
OncoKB
Version
ARID1A
p.Q405*
0.4535
441
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
v7.1
BRAF
p.V600E
0.5542
83
Missense_Mutation
Oncogenic
Gain-of-function
v7.1
CDK4
p.R24H
1.0000
136
Missense_Mutation
Likely Oncogenic
Likely Gain-of-function
v7.1
PTPRT
p.W691*
0.3333
135
Nonsense_Mutation
Likely Oncogenic
Likely Loss-of-function
v7.1
TP53
p.C277Y
1.0000
66
Missense_Mutation
Likely Oncogenic
Likely Loss-of-function
v7.1
Export
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