Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

997537

175-T

Value Required

HN1G62

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Tumor Biopsy

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	70%	15%	15%	<Unknown>

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	ATM	p.K2811Sfs*46	0.5648	108	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	ATR	p.I774Yfs*5	0.4468	141	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	BRAF	p.V600E	0.4531	64	Missense_Mutation	Oncogenic	Gain-of-function	v7.1
	BRCA2	p.T3085Qfs*19	0.5388	206	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	CDKN1B	p.D63Rfs*62	0.6450	476	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v7.1
	CREBBP	p.K1565Rfs*70	0.5534	253	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	EPHA7	p.X33_splice	0.5373	134	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v7.1
	FAT1	p.X3402_splice	0.4910	167	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v7.1
	FAT1	p.N126Kfs*3	0.5217	506	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v7.1
	HNF1A	p.P291Qfs*51	0.6000	435	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	JAK1	p.P861Tfs*4	0.5088	283	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v7.1
	KMT2D	p.Q2109Afs*46	0.3118	263	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v7.1
	MSH3	p.K383Rfs*32	1.0000	104	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	NBN	p.R466Gfs*18	0.1624	234	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	PHOX2B	p.G268Afs*41	0.4740	154	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	PIK3R1	p.R461*	0.5102	98	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	PTEN	p.L57Wfs*42	0.5116	43	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	PTEN	p.K267Rfs*9	0.4453	137	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	RAD50	p.K722Rfs*14	0.5240	292	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	RECQL	p.V41Sfs*2	0.3048	351	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	RNF43	p.G659Vfs*41	0.5150	233	Frame_Shift_Del	Inconclusive	Inconclusive	v7.1
	RNF43	p.R117Pfs*8	1.0000	127	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v7.1
	SESN2	p.Q229Rfs*18	0.4788	236	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	SPEN	p.A2105Lfs*33	0.4667	225	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	SPEN	p.P2461Hfs*15	0.4744	468	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	SPRTN	p.G222Afs*7	0.4877	203	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	TP53	p.R273C	0.4559	68	Missense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	ZNRF3	p.L31Rfs*91	0.3333	30	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	ZNRF3	p.G612Afs*54	0.4624	426	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	FANCL	p.Q99Rfs*17	0.4953	319	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	ZFP36L1	p.D133Tfs*15	0.2971	488	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	LRP1B	p.H4368Tfs*4	0.4722	144	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	CHD4	p.K119del	0.3060	134	In_Frame_Del	Inconclusive	Inconclusive	v7.1
	CHD2	p.K1245Nfs*4	0.6139	101	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	COL2A1	p.Q36*	0.5102	49	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	PTPN13	p.K285Nfs*45	0.4571	350	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	XRCC1	p.A189Lfs*44	0.6434	129	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	FANCE	p.P310Qfs*54	0.5024	207	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	HOXA11	p.I299Lfs*30	0.5054	279	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1

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