Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

CN0330

F216

Value Required

M518M203

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

5

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	60%	5%	35%	2+ (Moderate)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	AKT1	p.E17K	0.4070	86	Missense_Mutation	Oncogenic	Gain-of-function	-
	APC	p.R554*	0.5063	79	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	-
	APC	p.E1379*	0.4175	103	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	-
	KRAS	p.G13D	0.6284	148	Missense_Mutation	Oncogenic	Gain-of-function	-
	ZFP36L2	p.A345Gfs*129	0.3333	129	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	ZFP36L2	p.R160Pfs*314	0.5866	283	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-

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