Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

556579

094-R

Value Required

UWTJT3

Disease Body Location

Breast

BRCA

10006190 - Invasive breast carcinoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	85%	5%	10%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.1.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.1.4.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	BRCA1	p.H692Mfs*9	1.0000	105	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	TP53	p.H179R	1.0000	60	Missense_Mutation	Likely Oncogenic	Loss-of-function	-
	ZFHX3	p.D1894Gfs*21	0.9444	54	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	CHD4	p.E139del	0.1111	63	In_Frame_Del	Inconclusive	Inconclusive	-
	PRKDC	p.X1745_splice	0.6983	116	Splice_Site	Likely Oncogenic	Likely Loss-of-function	-

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