Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

CN0330

F216

Value Required

M518

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

4

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	60%	10%	30%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	AKT1	p.E17K	0.5000	156	Missense_Mutation	Oncogenic	Gain-of-function	-
	APC	p.R554*	0.5631	103	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	-
	APC	p.E1379*	0.4963	135	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	-
	FLCN	p.X513_splice	1.0000	32	Splice_Site	Likely Oncogenic	Likely Loss-of-function	-
	KRAS	p.G13D	0.6571	175	Missense_Mutation	Oncogenic	Gain-of-function	-
	ZFP36L2	p.A345Gfs*129	0.3018	222	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	ZFP36L2	p.R160Pfs*314	0.6731	416	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-

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