Sample Editor (PDX or In Vitro Culture)

Skip to Content

NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

116655

072-R

Value Required

ORIGINATOR

Disease Body Location

Digestive/Gastrointestinal

MACR

10009951 - Adenocarcinoma - colon

Value Required

Patient/Originator Specimen

Resection

Patient/Originating
Specimen

Passage of this Sample

Sample
Notes

Hide or show region

Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	10%	0%	90%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.4.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	None Found	p.S326Lfs*33	0.3534	116	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	APC	p.V452Sfs*7	0.4159	113	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	ATR	p.I774Yfs*5	0.4918	122	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	BRAF	p.V600E	0.5211	71	Missense_Mutation	Oncogenic	Gain-of-function	-
	BRCA2	p.I605Yfs*9	0.3937	127	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	HIST1H1D	p.A186Lfs*?	0.4545	341	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	KEAP1	p.F478Lfs*2	0.4531	309	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	NOTCH3	p.K2069Rfs*16	0.3860	171	Frame_Shift_Del	Likely Oncogenic	Likely Gain-of-function	-
	NOTCH3	p.A1802Gfs*8	0.4848	297	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	PIK3R1	p.X433_splice	0.5000	48	Splice_Site	Likely Oncogenic	Likely Loss-of-function	-
	RNF43	p.G659Vfs*41	0.5041	363	Frame_Shift_Del	Inconclusive	Inconclusive	-
	ZFP36L2	p.G107Afs*80	0.4504	413	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	ELMSAN1	p.N314Tfs*4	0.5561	196	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-

1 - 13