Sample Editor (PDX or In Vitro Culture)

Skip to Content

NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

CN0330

F216

Value Required

M551M121M1410

Disease Body Location

Digestive/Gastrointestinal

COAD

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

6

Sample
Notes

Hide or show region

Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	35%	50%	15%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.4.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	AKT1	p.E17K	0.5769	130	Missense_Mutation	Oncogenic	Gain-of-function	-
	APC	p.R554*	0.4679	109	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	-
	APC	p.E1379*	0.5890	163	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	-
	FLCN	p.X513_splice	1.0000	43	Splice_Site	Likely Oncogenic	Likely Loss-of-function	-
	KRAS	p.G13D	0.6164	232	Missense_Mutation	Oncogenic	Gain-of-function	-
	ZFP36L2	p.A345Gfs*129	0.2881	243	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	ZFP36L2	p.R160Pfs*314	0.6835	436	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-

1 - 7