Sample Editor (PDX or In Vitro Culture)

Skip to Content

NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

116655

072-R

Value Required

AK7A17

Disease Body Location

Digestive/Gastrointestinal

MACR

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

Hide or show region

Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	80%	10%	10%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.14.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.14.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	None Found	p.S326Lfs*33	0.3600	75	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	ANKRD11	p.A2265Rfs*8	0.5000	44	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	APC	p.V452Sfs*7	0.5258	97	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	APC	p.T1556Nfs*3	0.4885	217	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	BRAF	p.V600E	0.3871	62	Missense_Mutation	Oncogenic	Gain-of-function	-
	ERBB2	p.R487W	0.4778	406	Missense_Mutation	Likely Oncogenic	Likely Gain-of-function	-
	FBXW7	p.R465C	0.4308	195	Missense_Mutation	Oncogenic	Loss-of-function	-
	HIST1H1D	p.A186Lfs*?	0.5026	191	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	INHA	p.L189Cfs*2	0.4514	432	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	JARID2	p.R425Gfs*36	0.1385	65	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	KEAP1	p.F478Lfs*2	0.5508	236	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	KMT2D	p.T4772Nfs*9	0.2661	109	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	NOTCH3	p.K2069Rfs*16	0.5062	81	Frame_Shift_Del	Likely Oncogenic	Likely Gain-of-function	-
	RAD50	p.K722Rfs*14	0.5199	277	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	RNF43	p.G659Vfs*41	0.4451	182	Frame_Shift_Del	Inconclusive	Inconclusive	-
	TSC2	p.T1247Sfs*74	0.5000	126	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	ZFP36L2	p.G107Afs*80	0.4865	148	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	ELMSAN1	p.T1025Qfs*68	0.3774	159	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	ELMSAN1	p.I659Sfs*45	0.4826	172	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-

1 - 19