Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

116655

072-R

Value Required

AK7A20

Disease Body Location

Digestive/Gastrointestinal

MACR

10009951 - Adenocarcinoma - colon

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

1

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	Intermediate grade or moderately differentiated	80%	10%	10%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.51.0

Download Read1 FASTQ

Download Read2 FASTQ

2.0.2.14.0

Download RSEM (genes)

Download RSEM (isoforms)

2.0.2.14.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	None Found	p.S326Lfs*33	0.6271	59	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	None Found	p.K226Nfs*24	0.5148	169	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	ANKRD11	p.A2265Rfs*8	0.6667	27	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	APC	p.V452Sfs*7	0.4545	55	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	APC	p.T1556Nfs*3	0.5833	120	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	BRAF	p.V600E	0.6825	63	Missense_Mutation	Oncogenic	Gain-of-function	-
	FBXW7	p.R465C	0.5847	118	Missense_Mutation	Oncogenic	Loss-of-function	-
	HIST1H1D	p.A186Lfs*?	0.3942	104	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	INHA	p.L189Cfs*2	0.5182	274	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	KEAP1	p.F478Lfs*2	0.5680	169	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	-
	NOTCH3	p.K2069Rfs*16	0.6667	45	Frame_Shift_Del	Likely Oncogenic	Likely Gain-of-function	-
	NOTCH3	p.X715_splice	0.3600	50	Splice_Site	Likely Oncogenic	Likely Loss-of-function	-
	RAD50	p.K722Rfs*14	0.5189	185	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	RNF43	p.G659Vfs*41	0.4599	137	Frame_Shift_Del	Inconclusive	Inconclusive	-
	TNFAIP3	p.E366Gfs*22	0.2105	152	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	TSC2	p.T1247Sfs*74	0.5161	62	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	ZFP36L2	p.G107Afs*80	0.4275	138	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-
	ELMSAN1	p.I659Sfs*45	0.6708	161	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	-

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