Sample Editor (PDX or In Vitro Culture)

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NIH, National Cancer

Institute, Division of Cancer Treatment and Diagnosis (DCTD)

Sample

765638

272-R

Value Required

AG4I01IB7

Disease Body Location

Respiratory/Thoracic

LUSC

10025126 - Squamous cell lung carcinoma

Value Required

PDX

Resection

Patient/Originating
Specimen

Passage of this Sample

2

Sample
Notes

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Pathology Data (if available)

Pathology Data

View	Tumor Grade	Tumor Content	Necrosis	Stromal	Inflammatory Cells	Low Magnification Image	High Magnification Image
	High grade or poorly differentiated	60%	10%	30%	1+ (Low)

Genomic Analysis

External Genetic Analysis Data

A data file is available if a Download link is displayed:

2.0.1.50.0

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download Read1 FASTQ

Download Read2 FASTQ

1.2

Download RSEM (genes)

Download RSEM (isoforms)

2.0.1.13.0

OncoKB Gene Panel

View	Hugo Symbol	HGVS Protein Change	Variant Allele Frequency	Total Reads	Variant Class	Oncogenicity	Predicted Functional Effect	OncoKB Version
	APC	p.Q1303*	0.9921	127	Nonsense_Mutation	Likely Oncogenic	Likely Loss-of-function	v7.1
	BRCA2	p.G602R	0.4535	172	Missense_Mutation	Inconclusive	Inconclusive	v7.1
	NFE2L2	p.G31V	0.6333	90	Missense_Mutation	Oncogenic	Gain-of-function	v7.1
	SESN1	p.V263Ffs*63	0.6074	242	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1
	TP53	p.X33_splice	1.0000	87	Splice_Site	Likely Oncogenic	Likely Loss-of-function	v7.1
	ZMYM3	p.L85Afs*4	0.1329	158	Frame_Shift_Ins	Likely Oncogenic	Likely Loss-of-function	v7.1
	PRKDC	p.P2697Lfs*19	0.5891	129	Frame_Shift_Del	Likely Oncogenic	Likely Loss-of-function	v7.1

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